API reference

Docstrings are defined once per module below. Import everything from the top level as usual (import phypanda as pp); this page maps names to the detailed sections.

Where to find what

Topic	Page
compute_diversity, marginal_diversities, greedy_max_diversity, solve_max_diversity	Base helpers
DiversityMeasure protocol	Measure protocol
all_paths, max_tree, min_tree — measure singletons and solvers	Measures

Modules

• Base helpers
  • compute_diversity()
  • greedy_max_diversity()
  • marginal_diversities()
  • solve_max_diversity()
• Measure protocol
  • DiversityMeasure
• Measures
  • All-paths PD (MAPPD)
  • Max-tree PD
  • Min-tree PD
  • Tree PD (stub)
  • Network PD (stub)
  • Average-tree PD (stub)