Index A | C | D | E | F | H | I | L | M | N | O | P | R | S | T A adjacency() (forestpd.PhyloTree method) C compute() (forestpd.maf.HeuristicMAF method) (forestpd.maf.MAFComputer method) (forestpd.maf.MaffeRMAF method) (forestpd.maf.MaffeUMAF method) (forestpd.maf.TieredMAF method) D degrees() (forestpd.PhyloTree method) E evaluate_maxmpd() (in module forestpd) evaluate_pd() (forestpd.MaxMPDInstance method) F Forest (in module forestpd.maf) forestpd.io module forestpd.io.pz module forestpd.maf module forestpd.utils module ForestPDError ForestPDImportError ForestPDInputError ForestPDValueError ForestPDWarning from_edges() (forestpd.PhyloTree class method) from_leaf_arrays() (forestpd.PhyloTree class method) from_phylotrees() (forestpd.MaxMPDInstance class method) from_phylozoo() (in module forestpd.io.pz) H HeuristicMAF (class in forestpd.maf) I id_array() (forestpd.TaxonRegistry method) id_of() (forestpd.TaxonRegistry method) ids_of() (forestpd.TaxonRegistry method) L label_of() (forestpd.TaxonRegistry method) labels (forestpd.TaxonRegistry property) labels_of() (forestpd.TaxonRegistry method) M MAFComputer (class in forestpd.maf) MaffeRMAF (class in forestpd.maf) MaffeUMAF (class in forestpd.maf) MaxMPDInstance (class in forestpd) MaxMPDResult (class in forestpd) MaxMPDStructure (class in forestpd) module forestpd.io forestpd.io.pz forestpd.maf forestpd.utils N n (forestpd.TaxonRegistry property) n_edges (forestpd.PhyloTree property) n_taxa (forestpd.MaxMPDInstance property) n_trees (forestpd.MaxMPDInstance property) neighbours() (forestpd.PhyloTree method) O optimize() (forestpd.MaxMPDInstance method) optimize_many() (forestpd.MaxMPDInstance method) optimize_many_maxmpd() (in module forestpd) optimize_maxmpd() (in module forestpd) P PhyloTree (class in forestpd) prune() (in module forestpd.utils) R root_at() (forestpd.PhyloTree method) rooted (forestpd.MaxMPDInstance property) Rooting (class in forestpd.maf) S split_system() (in module forestpd.utils) structure() (forestpd.MaxMPDInstance method) T taxa (forestpd.MaxMPDInstance property) TaxonRegistry (class in forestpd) TieredMAF (class in forestpd.maf) to_newick() (in module forestpd.io) to_phylozoo() (in module forestpd.io.pz) to_splits_nexus() (in module forestpd.io) total_weight() (forestpd.PhyloTree method)
