Index A | C | D | G | M | N | P | S | T A adapt_tree_extension_for_pruned_network() (in module phypanda.measure.min_tree) AllPathsDiversity (class in phypanda.measure.all_paths) AverageTreeDiversity (class in phypanda.measure.average_tree) C compute_diversity() (phypanda.measure.all_paths.AllPathsDiversity method) (phypanda.measure.average_tree.AverageTreeDiversity method) (phypanda.measure.max_tree.MaxTreeDiversity method) (phypanda.measure.min_tree.MinTreeDiversity method) (phypanda.measure.network.NetworkDiversity method) (phypanda.measure.tree.TreeDiversity method) (phypanda.protocol.DiversityMeasure method) D diversity() (in module phypanda.base) DiversityMeasure (class in phypanda.protocol) G greedy_max_diversity() (in module phypanda.base) M marginal_diversities() (in module phypanda.base) MaxTreeDiversity (class in phypanda.measure.max_tree) MinTreeDiversity (class in phypanda.measure.min_tree) module phypanda.base phypanda.measure.all_paths phypanda.measure.all_paths_solvers phypanda.measure.average_tree phypanda.measure.max_tree phypanda.measure.min_tree phypanda.measure.network phypanda.measure.tree phypanda.protocol N NetworkDiversity (class in phypanda.measure.network) P phypanda.base module phypanda.measure.all_paths module phypanda.measure.all_paths_solvers module phypanda.measure.average_tree module phypanda.measure.max_tree module phypanda.measure.min_tree module phypanda.measure.network module phypanda.measure.tree module phypanda.protocol module prune_to_taxa() (in module phypanda.measure.min_tree) S solve_esw_fpt() (in module phypanda.measure.all_paths_solvers) solve_max_diversity() (in module phypanda.base) solve_maximization() (phypanda.measure.all_paths.AllPathsDiversity method) (phypanda.measure.average_tree.AverageTreeDiversity method) (phypanda.measure.max_tree.MaxTreeDiversity method) (phypanda.measure.min_tree.MinTreeDiversity method) (phypanda.measure.network.NetworkDiversity method) (phypanda.measure.tree.TreeDiversity method) (phypanda.protocol.DiversityMeasure method) solve_nsw_fpt_budget() (in module phypanda.measure.all_paths_solvers) T TreeDiversity (class in phypanda.measure.tree)