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Contents:

  • Introduction
  • Installation
  • Core Module
    • Overview
    • Multiple Sequence Alignments
    • Pairwise Distances
    • Splits
      • Overview
      • Splits
      • Split Systems
    • Quartets
      • Overview
      • Quartets
      • Quartet Profiles
      • Quartet Profile Sets
    • Networks
      • Overview
      • Directed Networks
        • Overview
        • Directed Network (Class)
        • Directed Network (Advanced Features)
        • Directed Generator
      • Semi-Directed Networks
        • Overview
        • Semi-Directed Network (Class)
        • Semi-Directed Network (Advanced Features)
        • Semi-Directed Generator
    • Primitives
      • Overview
      • Partitions
      • Circular Orderings
      • Directed Multi-Graphs
      • Mixed Multi-Graphs
  • Visualization Module
    • Overview
    • Plotting
    • Styling
  • Utilities Module
    • Overview
    • Input/Output (I/O)
      • Overview
      • I/O Operations
      • File Formats
        • NEXUS
        • PHYLIP
        • eNewick
        • DOT
        • FASTA
        • CSV
        • Edge list
      • Registering a New Format
    • Exceptions
    • Validation
  • Bibliography
  • Manual
  • Core Module
  • Networks
  • Semi-Directed Networks

Semi-Directed Networks#

  • Overview
  • Semi-Directed Network (Class)
  • Semi-Directed Network (Advanced Features)
  • Semi-Directed Generator

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